Geomicrobiology
Reconstructing Biofabrics, Mineral Fabrics, and Channel Architecture in 2D & 3D within Incipient Microbialites
A Case Study From Cone Pool, Little Hot Creek, California
Publication in prep
Microbialites record interactions between the biosphere and the geosphere for ~3.5 billion years and are the oldest fossils of life on Earth. Our ability to interpret these trace fossils hinges on our ability to properly interpret their texture (texture also provides critical context for interpreting their geochemistry). However, we don't completely understand which actions by microbial ecosystems or specific bacteria/archaea cause the mineral textures to form which end up preserved in the fossil record. As a result of an unreliable ability to interpret textures, texture itself can be considering an "unpromising" biosignature. If, however, our ability to interpret textures in fossils improved, the promise of texture as a biosignature might change in an exciting way.
I use fluorescently labelled embedded coring to reconstruct textures of microbes, minerals, and channel architecture within incipient microbialites in 2 & 3 dimensions on micron scales. I use a suite of microscopy techniques including epifluorescence and petrographic microscopy, coupled with microCT scanning at a voxel size of 2.1 microns. We have applied this technique to microbialites forming in Cone Pool, a Hot spring in Little Hot Creek, which is the subject of an in prep publication. However, we also use FLEC on other targets with support from the NASA Early Career Collaboration Award and the USC Wrigley Institute on Catalina Island, and the Cnidarian Evolutionary Ecology lab in USC Marine and Environmental Biology. These are ongoing projects.
Recent oral presentations about this project at AGU (Washington DC), GSA (Anaheim), and Life and Planet (London), all 2024
Bacterial Endolithic Activity as a Texture-Altering Force in Marine and Fresh Carbonate-forming Environments
Active study at Wrigley Marine Institute, Catalina Island & Little Hot Creek
This project focuses on the rate and nature of endolithic microboring in fresh and marine environments. Microboring in carbonate shells and sediments has been documented in marine environments since the 1800s. We investigate the potential of endolithic microboring to transform calcium carbonate fabrics entering the fossil record.
Where and how quickly does calcium carbonate precipitate in environments with heterogeneous biofabrics?
Active study at Little Hot Creek and in collaboration with the Natural History Museum of Los Angeles County Department of Mineral Sciences

Can't say much about this now - but hopefully soon
(If you wanted to locate where CaCO3 was precipitating on micron scales... and connect that process spatially with microbial biofabrics, how might you approach that challenge without breaking the bank? More soon at some summer conferences on the success of our strategy :) )
Geochemical Traces of Lithification Processes preserved in Stromatolites from the Archean to modern
Active study at USC and the Natural History Museum of Los Angeles County Department of Mineral Sciences
We investigate which microbial metabolisms may have significantly impacted stromatolite lithification informed by trends in marine geochemistry from Archean to Phanerozoic.
Project presented at Goldschmidt 2023 (Lyon) and Life and Planet 2023 (London)
Publications
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Cribb, A. T., Formoso, K. K., Woolley, C. H., Beech, J., Brophy, S., Byrne, P., Cassady, V. C., Godbold, A.L., Larina, E., Maxeiner, P., Wu, Y.H., Corsetti, A.F., Bottjer, D. J. (2023). Contrasting terrestrial and marine ecospace dynamics after the end-Triassic mass extinction event. Proceedings of the Royal Society B, 290(2012), 20232232.
Gu VW, Cho E, Thompson DT, Cassady VC, Borcherding N, Koch KE, Wu VT, Lorenzen AW, Kulak MV, Williams T, Zhang W, Weigel RJ., 2021. AP-2gamma is Required for Maintenance of Mammary Stem Cells.
Stem Cell Reports, Jan, 2021.
Franke CM, Wu VT, Grimm BG, Cassady VC, White J, Weigel RJ, Kulak MV., 2019. TFAP2C regulates carbonic anhydrase XII in human breast cancer. 2019. Oncogene, 1-12. doi:10.1038/s41388-019-1062-5.
De Andrade JP, Lorenzen AW, Wu VT, Bogachek MV, Park JM, Gu VW, Sevenich CM, Cassady VC, Beck AC, Kulak MV, Robinson RA, Lal G, Weigel RJ., 2017. Targeting the SUMO pathway as a novel treatment for anaplastic thyroid cancer. Oncotarget, 8(70), doi: 10.18632/oncotarget.21954.